Man page - getvariance(1)

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Package:  bitseq
apt-get install bitseq

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• bitseq

Manual

GETVARIANCE

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

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NAME

getVariance - estimates variance of MCMC samples

SYNOPSIS

getVariance -o <outFileName> [ OPTIONS ] [ sampleFiles ]

DESCRIPTION

Estimates variance of MCMC samples from 1 or multiple replicates.

[sample Files] should contain transposed MCMC samples from replicates.

OPTIONS

--help

Show this help information.

-l , --log

Use logged values. (default: Off)

--norm= <normalization>

Normalization constants for each input file provided as comma separated list of doubles (e.g. 1.0017,1.0,0.9999 ).

-o <outFileName> , --outFile= <outFileName>

Name of the output file.

-t <type> , --type= <type>

Type of variance, possible values: [sample,sqDif] for sample variance or squared difference. (default: sample)

-v , --verbose

Verbose output. (default: Off)

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