Man page - getcounts(1)

Packages contains this manual

Package:  bitseq
apt-get install bitseq

Documentations in package:
• bitseq

Manual

GETCOUNTS.PY

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

---

NAME

getCounts.py - generate read counts for each input file

SYNOPSIS

getCounts.py [ options ] [ <inputFile.thetaMeans> ] +

DESCRIPTION

This program reads supplied .thetaMeans files and using either information from .prob files or Nmap option generates read counts for each input file provided.

OPTIONS

-h , --help

show this help message and exit

-o OUT, --outFile = OUT

Output file

-v , --verbose

Verbose output

-p PROBDIR, --probDir = PROBDIR

Directory with .prob files. The program will look in here for files with same name except fot extension .prob in order to find out total-aligned-read counts for each experiment.

-n NMAP, --Nmap = NMAP

Comma separated list of total aligned-read-counts for each experiment.

---