Man page - coves-se(1)

Manual

coves-SE - detection of transfer RNA genes in genomic sequence

FATAL: Usage: coves [-options] <CM file> <seqfile> where options are:

	-a		: show all pairs, not just Watson-Crick
	-g

<gcfrac> : set expected background GC composition (default 0.5)

	-m
			: mountain representation of structural alignment
	-s		: secondary structure string representation of

structural alignment

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.