Man page - covels-se(1)
Manual
COVELS-SE
NAMESYNOPSIS
DESCRIPTION
where options are:
AUTHOR
NAME
covels-SE - detection of transfer RNA genes in genomic sequence
SYNOPSIS
covels [ -options ] <CM file> <seqfile>
DESCRIPTION
covels - scan sequences for matches to an RNA covariance model
version 2.4.4 (January 1996)
where options are:
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-c |
: do complementary strand too |
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-g |
<fracGC> : set background expected GC content (0.5 default)
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-h |
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: print short help and version info |
-o <file>
: save hits in <file>
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-t <thresh> : set score reporting threshold |
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-w <window> : set scanning window size |
CRASH PROTECTION OPTIONS:
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-D <filename> : save name of last sequence processed |
EXPERIMENTAL OPTIONS:
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-E |
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: set epsilon for fast search |
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-F |
: fast heuristic search |
AUTHOR
This manpage was
written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.