Man page - coordinatetranslate(1)

Packages contains this manual

Package:  progressivemauve
apt-get install progressivemauve

Manuals in package:
• backbone_global_to_local(1)
• xmfa2maf(1)
• mfa2xmfa(1)
• repeatoire(1)
Documentations in package:
• progressivemauve

Manual

COORDINATETRANSLATE

NAME

coordinateTranslate - part of mauveAligner package

SYNOPSIS

coordinateTranslate <XMFA alignment> <alignment coordinate file>

DESCRIPTION

Alignment coordinate file should be structured into 2 tab-delimited columns: <block ID> <column> Output will be the nearest aligned position for each genome in the block, with 0 entries for genomes undefined in the block