Man page - cnv_expression_correlate(1)

Manual

CNV_EXPRESSION_CORRELATE.PY

NAME
DESCRIPTION
positional arguments:
options:
AUTHOR

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NAME

cnv_expression_correlate.py - Calculate correlation coefficients for gene expression and copy number

DESCRIPTION

usage: cnv_expression_correlate.py [-h] [-o FILE] CNV_FILE RNA_FILE

Calculate correlation coefficients for gene expression and copy number. Data source for both inputs is TCGA via cBioPortal.

positional arguments:

CNV_FILE

Gene copy number calls for many samples.

RNA_FILE

Gene expression for many samples (mostly overlapping with CNV samples).

options:

-h , --help

show this help message and exit

-o FILE, --output FILE

Output file name (summary table).

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

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